STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXO15170.1KEGG: rlt:Rleg2_4805 3.4e-44 MATE efflux family protein; Psort location: CytoplasmicMembrane, score: 10.00. (453 aa)    
Predicted Functional Partners:
KXO15168.1
RteC protein.
       0.757
KXO15169.1
Hypothetical protein.
       0.757
KXO15171.1
Transcriptional regulator, AraC family; KEGG: cnc:CNE_2c22550 1.5e-11 pobA; P-hydroxybenzoate hydroxylase PobA; Psort location: Cytoplasmic, score: 9.97.
 
   
 0.630
KXO17290.1
MATE efflux family protein; KEGG: rcp:RCAP_rcc02680 1.8e-25 mdtK; multidrug resistance protein MdtK K03327; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.469
KXO15172.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.466
KXO15700.1
KEGG: pmz:HMPREF0659_A5935 1.4e-168 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134; Psort location: Cytoplasmic, score: 9.97.
   
    0.416
KXO17695.1
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
   
    0.400
Your Current Organism:
Prevotella bivia
NCBI taxonomy Id: 28125
Other names: ATCC 29303, Bacteroides bivius, CCUG 9557, CIP 105105, DSM 20514, JCM 6331, LMG 6452, LMG:6452, NCTC 11156, P. bivia, VPI 6822, strain 653C, strain JCVIHMP010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.