STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXO14612.1Hypothetical protein. (205 aa)    
Predicted Functional Partners:
KXO14613.1
MazG family protein; KEGG: pdn:HMPREF9137_2445 1.2e-125 protein MazG; K02428 dITP/XTP pyrophosphatase; Psort location: Cytoplasmic, score: 8.96.
       0.839
rnz
Putative ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
       0.729
valS
valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
       0.678
KXO14610.1
Sigma-70 region 2; KEGG: shn:Shewana3_0763 3.2e-13 ECF subfamily RNA polymerase sigma-24 factor K03088; Psort location: CytoplasmicMembrane, score: 9.82; Belongs to the sigma-70 factor family. ECF subfamily.
       0.521
KXO14608.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.413
KXO14609.1
Hypothetical protein.
       0.413
Your Current Organism:
Prevotella bivia
NCBI taxonomy Id: 28125
Other names: ATCC 29303, Bacteroides bivius, CCUG 9557, CIP 105105, DSM 20514, JCM 6331, LMG 6452, LMG:6452, NCTC 11156, P. bivia, VPI 6822, strain 653C, strain JCVIHMP010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.