Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXO14394.1Hypothetical protein. (77 aa)    
Predicted Functional Partners:
KXO14395.1
Hypothetical protein.
       0.661
KXO14396.1
Site-specific recombinase, phage integrase family; KEGG: bsr:I33_1800 1.2e-09 xerC; ATP-dependent protease HslV K03733; Psort location: Cytoplasmic, score: 9.97; Belongs to the 'phage' integrase family.
       0.661
KXO14397.1
Site-specific recombinase, phage integrase family; KEGG: apb:SAR116_1748 0.00027 phage integrase; Psort location: Cytoplasmic, score: 8.96; Belongs to the 'phage' integrase family.
       0.513
KXO14392.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.403
KXO14393.1
Hypothetical protein.
       0.403
Your Current Organism:
Prevotella bivia
NCBI taxonomy Id: 28125
Other names: ATCC 29303, Bacteroides bivius, CCUG 9557, CIP 105105, DSM 20514, JCM 6331, LMG 6452, LMG:6452, NCTC 11156, P. bivia, VPI 6822, strain 653C, strain JCVIHMP010
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