Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KXO14415.1KEGG: apb:SAR116_0666 1.2e-15 DNA repair protein RadC K03630; Psort location: Cytoplasmic, score: 9.97; Belongs to the UPF0758 family. (225 aa)    
Predicted Functional Partners:
KXO18058.1
Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
  
  
 0.769
KXO15943.1
KEGG: apb:SAR116_0709 0.00014 cell shape-determining protein K03570; Psort location: OuterMembrane, score: 9.49.
  
  
 0.709
KXO14416.1
KEGG: pmz:HMPREF0659_A6220 4.6e-140 glycosyltransferase, group 2 family protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.705
KXO18351.1
DNA protecting protein DprA; KEGG: ccm:Ccan_01460 1.5e-61 protein smf K04096; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.561
efp
Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
       0.529
KXO14870.1
Competence/damage-inducible protein CinA domain protein; KEGG: cco:CCC13826_0279 1.7e-17 fadD; long-chain-fatty-acid--CoA ligase K03743; Psort location: Cytoplasmic, score: 8.96; Belongs to the CinA family.
     
 0.472
KXO18453.1
comF family protein; KEGG: chu:CHU_3495 3.3e-34 purF; amidophosphoribosyltransferase K00764; Psort location: Cytoplasmic, score: 9.26.
  
    0.459
KXO17517.1
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
  
   
 0.449
mutL
DNA mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
 
   
 0.437
Your Current Organism:
Prevotella bivia
NCBI taxonomy Id: 28125
Other names: ATCC 29303, Bacteroides bivius, CCUG 9557, CIP 105105, DSM 20514, JCM 6331, LMG 6452, LMG:6452, NCTC 11156, P. bivia, VPI 6822, strain 653C, strain JCVIHMP010
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