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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXO14448.1TonB-dependent receptor plug domain protein; KEGG: ccv:CCV52592_1977 3.4e-07 sulfate/thiosulfate import ATP-binding protein CysA; Psort location: OuterMembrane, score: 9.92. (891 aa)    
Predicted Functional Partners:
KXO14447.1
Hypothetical protein.
 
     0.912
KXO15484.1
Hypothetical protein.
 
     0.767
KXO14905.1
TonB-dependent receptor.
  
 
   0.641
KXO18296.1
Hypothetical protein.
  
     0.602
KXO17961.1
TonB-dependent receptor; KEGG: hip:CGSHiEE_01810 1.0e-07 bcp; TonB K03832.
  
 
   0.581
KXO15032.1
Hypothetical protein; KEGG: ddi:DDB_G0281179 1.0e-05 clkA; CLK family protein kinase; K08287 dual-specificity kinase; Psort location: OuterMembrane, score: 9.52.
  
     0.543
KXO15030.1
TonB-dependent receptor.
  
     0.535
KXO14450.1
Hypothetical protein.
 
     0.528
KXO14875.1
Hypothetical protein.
  
     0.516
KXO15598.1
Hypothetical protein.
  
     0.497
Your Current Organism:
Prevotella bivia
NCBI taxonomy Id: 28125
Other names: ATCC 29303, Bacteroides bivius, CCUG 9557, CIP 105105, DSM 20514, JCM 6331, LMG 6452, LMG:6452, NCTC 11156, P. bivia, VPI 6822, strain 653C, strain JCVIHMP010
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