Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXA33374.1KEGG: bya:BANAU_2956 2.6e-11 ytrA; GntR family transcriptional regulator. (125 aa)    
Predicted Functional Partners:
KXA33377.1
KEGG: ccm:Ccan_20920 8.0e-49 ABC transporter ATP-binding protein yhcG; Psort location: Cytoplasmic, score: 9.12.
 
  
 0.902
KXA33376.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
   
 0.711
KXA33375.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.685
KXA33373.1
TonB-dependent receptor plug domain protein; Psort location: OuterMembrane, score: 9.52.
       0.603
KXA35531.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
   
    0.424
Your Current Organism:
Prevotella corporis
NCBI taxonomy Id: 28128
Other names: ATCC 33547, Bacteroides corporis, CIP 105107, DSM 18810, JCM 8529, NCTC 13065, P. corporis, VPI 9342, strain Lambe 532-70A
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