Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
KXA33408.1KEGG: pit:PIN17_A1089 8.5e-116 pseudouridylate synthase K06178; Psort location: Cytoplasmic, score: 9.97; Belongs to the pseudouridine synthase RsuA family. (234 aa)    
Predicted Functional Partners:
cmk
Cytidylate kinase; KEGG: pmz:HMPREF0659_A7170 3.0e-97 cmk; cytidylate kinase K00945; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.909
KXA45137.1
Exodeoxyribonuclease III; KEGG: pdn:HMPREF9137_1054 1.4e-122 xth; exodeoxyribonuclease III K01142; Psort location: Cytoplasmic, score: 9.97.
  
    0.842
der
Ribosome biogenesis GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.803
KXA33409.1
Hypothetical protein; KEGG: vcn:VOLCADRAFT_91759 0.00020 hypothetical protein; K01640 hydroxymethylglutaryl-CoA lyase.
       0.773
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
   0.733
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
   0.638
rplW
Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.
  
 
   0.635
asnS
asparagine--tRNA ligase; KEGG: pit:PIN17_A1088 8.6e-242 asnS; asparagine--tRNA ligase K01893; Psort location: Cytoplasmic, score: 10.00.
       0.621
rplD
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.
   
 
 0.614
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
   0.589
Your Current Organism:
Prevotella corporis
NCBI taxonomy Id: 28128
Other names: ATCC 33547, Bacteroides corporis, CIP 105107, DSM 18810, JCM 8529, NCTC 13065, P. corporis, VPI 9342, strain Lambe 532-70A
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