STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA33409.1Hypothetical protein; KEGG: vcn:VOLCADRAFT_91759 0.00020 hypothetical protein; K01640 hydroxymethylglutaryl-CoA lyase. (195 aa)    
Predicted Functional Partners:
KXA33408.1
KEGG: pit:PIN17_A1089 8.5e-116 pseudouridylate synthase K06178; Psort location: Cytoplasmic, score: 9.97; Belongs to the pseudouridine synthase RsuA family.
       0.773
asnS
asparagine--tRNA ligase; KEGG: pit:PIN17_A1088 8.6e-242 asnS; asparagine--tRNA ligase K01893; Psort location: Cytoplasmic, score: 10.00.
       0.508
KXA33406.1
Hypothetical protein.
       0.492
Your Current Organism:
Prevotella corporis
NCBI taxonomy Id: 28128
Other names: ATCC 33547, Bacteroides corporis, CIP 105107, DSM 18810, JCM 8529, NCTC 13065, P. corporis, VPI 9342, strain Lambe 532-70A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.