STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW33452.1Calcium-translocating P-type ATPase, PMCA-type; Derived by automated computational analysis using gene prediction method: Protein Homology. (901 aa)    
Predicted Functional Partners:
APW34110.1
Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.709
APW33453.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.556
APW34545.1
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.470
rimP
Ribosome assembly cofactor RimP; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.
       0.463
APW33532.1
CAAX protease family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.458
nusA
Transcription termination/antitermination protein NusA; Participates in both transcription termination and antitermination.
       0.451
pgk
Phosphoglycerate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phosphoglycerate kinase family.
  
 
 0.447
APW34846.1
cation/H(+) antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.444
RibF
Riboflavin biosynthesis protein RibF; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribF family.
   
   0.428
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 
 0.414
Your Current Organism:
Prevotella intermedia
NCBI taxonomy Id: 28131
Other names: ATCC 25611, Bacteroides intermedius, Bacteroides melaninogenicus subsp. intermedius, CCUG 24041, CIP 101222, CIP 103682, DSM 20706, JCM 11150, JCM 12248, NCTC 13070, P. intermedia, VPI 4197, strain Finegold B422
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