Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
APW33579.1DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa)    
Predicted Functional Partners:
APW33580.1
Fe-S metabolism protein SufE; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.774
APW33578.1
Collagenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.718
APW33581.1
RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.712
APW33452.1
Calcium-translocating P-type ATPase, PMCA-type; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.470
mnmG
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
    
 
 0.445
NupG
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.443
msrB
Four helix bundle protein; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
  
 0.423
APW35004.1
RagB/SusD family nutrient uptake outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.408
Your Current Organism:
Prevotella intermedia
NCBI taxonomy Id: 28131
Other names: ATCC 25611, Bacteroides intermedius, Bacteroides melaninogenicus subsp. intermedius, CCUG 24041, CIP 101222, CIP 103682, DSM 20706, JCM 11150, JCM 12248, NCTC 13070, P. intermedia, VPI 4197, strain Finegold B422
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