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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
APW33635.1Glutamine cyclotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)    
Predicted Functional Partners:
APW33636.1
Fused gamma-glutamyl-gamma-aminobutyrate hydrolase/peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.853
APW33637.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.708
APW33634.1
Cysteine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.642
APW33851.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.614
APW34611.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.480
APW35533.1
Peptidyl-prolyl cis-trans isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.465
APW33763.1
DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.464
APW33638.1
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.458
APW33713.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.434
mutS2
Endonuclease MutS2; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.
  
     0.403
Your Current Organism:
Prevotella intermedia
NCBI taxonomy Id: 28131
Other names: ATCC 25611, Bacteroides intermedius, Bacteroides melaninogenicus subsp. intermedius, CCUG 24041, CIP 101222, CIP 103682, DSM 20706, JCM 11150, JCM 12248, NCTC 13070, P. intermedia, VPI 4197, strain Finegold B422
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