STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW33774.1DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (100 aa)    
Predicted Functional Partners:
APW33775.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.925
traA
Conjugal transfer protein TraA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.757
BWX40_02440
Hypothetical protein; Frameshifted; internal stop; incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.756
APW33781.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.750
traN
Conjugative transposon protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.669
traI
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.658
traF
Conjugal transfer protein TraF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.641
traM
Conjugative transposon protein TraM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.631
APW33796.1
Mobilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.622
APW33778.1
DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.605
Your Current Organism:
Prevotella intermedia
NCBI taxonomy Id: 28131
Other names: ATCC 25611, Bacteroides intermedius, Bacteroides melaninogenicus subsp. intermedius, CCUG 24041, CIP 101222, CIP 103682, DSM 20706, JCM 11150, JCM 12248, NCTC 13070, P. intermedia, VPI 4197, strain Finegold B422
Server load: medium (74%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.