STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW33856.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (673 aa)    
Predicted Functional Partners:
APW33855.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.767
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.752
dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
    
  0.687
APW33854.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.526
APW33857.1
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.520
APW33860.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.513
APW33859.1
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.512
APW33861.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.501
APW33858.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.495
APW33862.1
RpiR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.491
Your Current Organism:
Prevotella intermedia
NCBI taxonomy Id: 28131
Other names: ATCC 25611, Bacteroides intermedius, Bacteroides melaninogenicus subsp. intermedius, CCUG 24041, CIP 101222, CIP 103682, DSM 20706, JCM 11150, JCM 12248, NCTC 13070, P. intermedia, VPI 4197, strain Finegold B422
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