STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerCTyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (293 aa)    
Predicted Functional Partners:
raiA
Ribosomal subunit interface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.936
rpsU
30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS21 family.
       0.714
HsdM
Type I restriction-modification system subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.517
APW35643.1
DNA translocase FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.485
APW33894.1
Virulence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.469
APW33994.1
Virulence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.469
APW34171.1
Virulence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.469
APW34801.1
Virulence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.469
APW33685.1
Amidophosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.438
APW34811.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.
  
     0.429
Your Current Organism:
Prevotella intermedia
NCBI taxonomy Id: 28131
Other names: ATCC 25611, Bacteroides intermedius, Bacteroides melaninogenicus subsp. intermedius, CCUG 24041, CIP 101222, CIP 103682, DSM 20706, JCM 11150, JCM 12248, NCTC 13070, P. intermedia, VPI 4197, strain Finegold B422
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