Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APW34171.1Virulence protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (477 aa)    
Predicted Functional Partners:
APW34172.1
Mobilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.703
APW35596.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.
  
     0.572
APW34800.1
Mobilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.507
APW35468.1
GLPGLI family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.496
APW33893.1
Mobilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.482
APW33995.1
Mobilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.468
APW34173.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.439
APW35165.1
Mobilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.427
APW35602.1
Mobilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.427
APW35364.1
Peptidase M64; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.424
Your Current Organism:
Prevotella intermedia
NCBI taxonomy Id: 28131
Other names: ATCC 25611, Bacteroides intermedius, Bacteroides melaninogenicus subsp. intermedius, CCUG 24041, CIP 101222, CIP 103682, DSM 20706, JCM 11150, JCM 12248, NCTC 13070, P. intermedia, VPI 4197, strain Finegold B422
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