STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW34213.1Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (564 aa)    
Predicted Functional Partners:
APW34214.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.981
APW34972.1
Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.795
APW34215.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.627
fabD
Malonyl CoA-acyl carrier protein transacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.605
APW34974.1
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.
  
     0.579
PulA
Type I pullulanase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.
 
  
 0.567
APW35113.1
1,4-alpha-glucan-branching enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.517
APW33432.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.468
APW34216.1
MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.458
APW35352.1
Glycogen synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.451
Your Current Organism:
Prevotella intermedia
NCBI taxonomy Id: 28131
Other names: ATCC 25611, Bacteroides intermedius, Bacteroides melaninogenicus subsp. intermedius, CCUG 24041, CIP 101222, CIP 103682, DSM 20706, JCM 11150, JCM 12248, NCTC 13070, P. intermedia, VPI 4197, strain Finegold B422
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.