Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hcpHydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. (547 aa)    
Predicted Functional Partners:
nrfH
Cytochrome c nitrite reductase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.942
NrfA
Ammonia-forming cytochrome c nitrite reductase subunit c552; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome c-552 family.
  
 
 0.941
Gdh
Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
     
 0.911
APW33406.1
Glutamine synthetase type III; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutamine synthetase family.
     
  0.900
APW34382.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.702
NifJ
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.599
APW34384.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.409
APW33828.1
FprA family A-type flavoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.406
APW35567.1
Rubrerythrin; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.402
Your Current Organism:
Prevotella intermedia
NCBI taxonomy Id: 28131
Other names: ATCC 25611, Bacteroides intermedius, Bacteroides melaninogenicus subsp. intermedius, CCUG 24041, CIP 101222, CIP 103682, DSM 20706, JCM 11150, JCM 12248, NCTC 13070, P. intermedia, VPI 4197, strain Finegold B422
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