STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW34616.1Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. (1086 aa)    
Predicted Functional Partners:
APW34617.1
16S rRNA (uracil(1498)-N(3))-methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.511
APW34618.1
Excinuclease ABC subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.506
NupG
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.506
APW33750.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.505
APW33425.1
Collagen-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.457
APW33529.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.453
BWX40_07720
Hypothetical protein; TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
  
    0.447
APW34720.1
Membrane receptor RagA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.445
dppIV
S9 family peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.439
APW35442.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.409
Your Current Organism:
Prevotella intermedia
NCBI taxonomy Id: 28131
Other names: ATCC 25611, Bacteroides intermedius, Bacteroides melaninogenicus subsp. intermedius, CCUG 24041, CIP 101222, CIP 103682, DSM 20706, JCM 11150, JCM 12248, NCTC 13070, P. intermedia, VPI 4197, strain Finegold B422
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.