Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
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[Homology]
Score
APW34805.1Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)    
Predicted Functional Partners:
APW35136.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.651
APW34804.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.643
APW34124.1
Carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.609
APW35225.1
Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.607
APW33470.1
Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.600
BWX40_09985
Type VI secretion system needle protein Hcp; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.600
APW35115.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.599
APW35235.1
PKD domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.586
APW34774.1
Collagen-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.580
APW35090.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.549
Your Current Organism:
Prevotella intermedia
NCBI taxonomy Id: 28131
Other names: ATCC 25611, Bacteroides intermedius, Bacteroides melaninogenicus subsp. intermedius, CCUG 24041, CIP 101222, CIP 103682, DSM 20706, JCM 11150, JCM 12248, NCTC 13070, P. intermedia, VPI 4197, strain Finegold B422
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