Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APW34878.1Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa)    
Predicted Functional Partners:
APW34873.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.861
BWX40_08560
Phage head morphogenesis protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.817
APW34877.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
APW33869.1
Phage head morphogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.752
APW33871.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.752
APW33879.1
Tail tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.733
APW35065.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.731
APW34875.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.682
APW34876.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.681
APW34874.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.466
Your Current Organism:
Prevotella intermedia
NCBI taxonomy Id: 28131
Other names: ATCC 25611, Bacteroides intermedius, Bacteroides melaninogenicus subsp. intermedius, CCUG 24041, CIP 101222, CIP 103682, DSM 20706, JCM 11150, JCM 12248, NCTC 13070, P. intermedia, VPI 4197, strain Finegold B422
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