STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
porUPor secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1181 aa)    
Predicted Functional Partners:
porV-2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.945
porX
Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.867
sov
Cell surface protein SprA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.845
porT
PorT family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.839
porP
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.821
porW
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.821
porY
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.803
APW35433.1
DUF3308 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.801
APW33598.1
T9SS C-terminal target domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.775
APW35192.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.774
Your Current Organism:
Prevotella intermedia
NCBI taxonomy Id: 28131
Other names: ATCC 25611, Bacteroides intermedius, Bacteroides melaninogenicus subsp. intermedius, CCUG 24041, CIP 101222, CIP 103682, DSM 20706, JCM 11150, JCM 12248, NCTC 13070, P. intermedia, VPI 4197, strain Finegold B422
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.