STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW34999.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (877 aa)    
Predicted Functional Partners:
BWX40_02640
Transposase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.697
APW35348.1
T9SS C-terminal target domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.654
APW35338.1
DUF490 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.642
APW35106.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.621
APW34734.1
DUF4954 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.610
APW33764.1
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.571
APW33697.1
Sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.569
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
   0.519
APW33556.1
Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.513
rpsI
30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family.
   
   0.509
Your Current Organism:
Prevotella intermedia
NCBI taxonomy Id: 28131
Other names: ATCC 25611, Bacteroides intermedius, Bacteroides melaninogenicus subsp. intermedius, CCUG 24041, CIP 101222, CIP 103682, DSM 20706, JCM 11150, JCM 12248, NCTC 13070, P. intermedia, VPI 4197, strain Finegold B422
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