STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PhoAcid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)    
Predicted Functional Partners:
RibF
Riboflavin biosynthesis protein RibF; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribF family.
     
  0.900
RibE
Riboflavin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.900
APW34655.1
Oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.590
APW35191.1
Rubredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.558
APW35009.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.557
APW35011.1
IS982 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.553
nadK
NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
   
 
  0.502
APW34389.1
Phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.481
APW35012.1
Flagellar protein FliS; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.406
Your Current Organism:
Prevotella intermedia
NCBI taxonomy Id: 28131
Other names: ATCC 25611, Bacteroides intermedius, Bacteroides melaninogenicus subsp. intermedius, CCUG 24041, CIP 101222, CIP 103682, DSM 20706, JCM 11150, JCM 12248, NCTC 13070, P. intermedia, VPI 4197, strain Finegold B422
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.