Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
APW35470.1ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)    
Predicted Functional Partners:
APW34016.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.877
APW34015.1
Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.720
APW35471.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.697
APW35468.1
GLPGLI family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.690
APW35469.1
GLPGLI family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.673
rpsI
30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family.
  
   
 0.520
APW35467.1
GLPGLI family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.486
APW34593.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.464
atpD
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
   
 
 0.460
APW35014.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.443
Your Current Organism:
Prevotella intermedia
NCBI taxonomy Id: 28131
Other names: ATCC 25611, Bacteroides intermedius, Bacteroides melaninogenicus subsp. intermedius, CCUG 24041, CIP 101222, CIP 103682, DSM 20706, JCM 11150, JCM 12248, NCTC 13070, P. intermedia, VPI 4197, strain Finegold B422
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