Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BWX40_12025DNA-binding protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (104 aa)    
Predicted Functional Partners:
APW33775.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.786
APW35580.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
traA
Conjugal transfer protein TraA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.731
APW33781.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.725
BWX40_02440
Hypothetical protein; Frameshifted; internal stop; incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.716
APW33778.1
DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.659
traI
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.625
traN
Conjugative transposon protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.621
BWX40_02420
Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.591
traF
Conjugal transfer protein TraF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.584
Your Current Organism:
Prevotella intermedia
NCBI taxonomy Id: 28131
Other names: ATCC 25611, Bacteroides intermedius, Bacteroides melaninogenicus subsp. intermedius, CCUG 24041, CIP 101222, CIP 103682, DSM 20706, JCM 11150, JCM 12248, NCTC 13070, P. intermedia, VPI 4197, strain Finegold B422
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