Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BWX40_12065Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)    
Predicted Functional Partners:
HsdM
Type I restriction-modification system subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.962
APW35587.1
Restriction endonuclease subunit R; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.934
APW33537.1
Type I restriction-modification system subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.821
APW35654.1
Cell filamentation protein Fic; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.775
APW33778.1
DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.743
APW35583.1
Site-specific integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.
 
     0.586
APW33536.1
Restriction endonuclease subunit R; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.582
APW35586.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.515
APW35588.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.450
Your Current Organism:
Prevotella intermedia
NCBI taxonomy Id: 28131
Other names: ATCC 25611, Bacteroides intermedius, Bacteroides melaninogenicus subsp. intermedius, CCUG 24041, CIP 101222, CIP 103682, DSM 20706, JCM 11150, JCM 12248, NCTC 13070, P. intermedia, VPI 4197, strain Finegold B422
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