STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ48532.116S rRNA (guanine(966)-N(2))-methyltransferase RsmD. (176 aa)    
Predicted Functional Partners:
SJZ48517.1
Protein of unknown function.
  
    0.822
SJZ48497.1
Hypothetical protein.
       0.790
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
 
  
 0.687
SJZ51735.1
Protein of unknown function.
  
     0.681
SJZ48471.1
UvrD-like helicase C-terminal domain-containing protein.
       0.669
SJZ79806.1
Protein of unknown function.
  
    0.665
rlmH
23S rRNA (pseudouridine1915-N3)-methyltransferase; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
 
   
 0.551
SJZ56969.1
Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
  
    0.548
SKA00436.1
Ribosome-associated heat shock protein Hsp15.
  
    0.472
der
GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
    0.464
Your Current Organism:
Prevotella oulorum
NCBI taxonomy Id: 28136
Other names: ATCC 43324, Bacteroides oulorum, CCUG 54769, CIP 104477, JCM 14966, NCTC 11871, P. oulorum, Prevotella oulora, strain WPH 179
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.