STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA14726.1Rod shape-determining protein MreD. (166 aa)    
Predicted Functional Partners:
SKA14739.1
Rod shape-determining protein MreC.
  
    0.798
SKA14671.1
Rod shape determining protein RodA; Belongs to the SEDS family.
  
    0.700
SKA14686.1
Penicillin-binding protein 2.
       0.697
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.691
SKA14752.1
Rod shape-determining protein MreB.
       0.674
SKA14768.1
Phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase.
       0.665
SJZ48226.1
Hypothetical protein.
  
    0.660
SJZ47089.1
Sporulation related domain-containing protein.
  
     0.646
SJZ78085.1
Gliding motility-associated protein GldM.
  
     0.626
SJZ65853.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
  
     0.603
Your Current Organism:
Prevotella oulorum
NCBI taxonomy Id: 28136
Other names: ATCC 43324, Bacteroides oulorum, CCUG 54769, CIP 104477, JCM 14966, NCTC 11871, P. oulorum, Prevotella oulora, strain WPH 179
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.