STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB32771.1Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)    
Predicted Functional Partners:
KXB32694.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.879
KXB32770.1
Acetate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.802
KXB32693.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.776
KXB32692.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.659
flgC
Flagellar basal-body rod protein FlgC; With FlgF and B makes up the proximal portion of the flagellar basal body rod; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.617
KXB30174.1
Peptidoglycan transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.502
KXB29710.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.402
Your Current Organism:
Dechloromonas denitrificans
NCBI taxonomy Id: 281362
Other names: ATCC BAA-841, D. denitrificans, DSM 15892, Dechloromonas denitrificans Horn et al. 2005, strain ED1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.