Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KXB30849.1Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology. (101 aa)    
Predicted Functional Partners:
KXB29015.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.940
KXB28957.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.939
KXB30851.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.909
KXB30850.1
Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.866
KXB30847.1
Two-component system sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.806
KXB30483.1
Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.791
flgE
Flagellar biosynthesis protein FlgE; The hook connects flagellar basal body to the flagellar filament; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.763
KXB30848.1
Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.752
flgH
Flagellar biosynthesis protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
   
    0.749
KXB30491.1
Flagellar biosynthesis protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
   
    0.749
Your Current Organism:
Dechloromonas denitrificans
NCBI taxonomy Id: 281362
Other names: ATCC BAA-841, D. denitrificans, DSM 15892, Dechloromonas denitrificans Horn et al. 2005, strain ED1
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