STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB30253.1MSHA biogenesis protein MshE; Derived by automated computational analysis using gene prediction method: Protein Homology. (569 aa)    
Predicted Functional Partners:
KXB30252.1
MSHA biogenesis protein MshG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.988
KXB31758.1
Type II secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.939
KXB31408.1
Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.939
KXB31715.1
Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.938
KXB30250.1
General secretion pathway protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.912
KXB30251.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.897
KXB31714.1
Methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.870
KXB30617.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.859
KXB31759.1
Type II secretion system protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.731
KXB30247.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.702
Your Current Organism:
Dechloromonas denitrificans
NCBI taxonomy Id: 281362
Other names: ATCC BAA-841, D. denitrificans, DSM 15892, Dechloromonas denitrificans Horn et al. 2005, strain ED1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.