STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB30414.1Protein nirF; Derived by automated computational analysis using gene prediction method: Protein Homology. (390 aa)    
Predicted Functional Partners:
KXB30413.1
Cytochrome C55X precursor NirC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.997
KXB30416.1
Protein nirG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.990
KXB30417.1
Protein nirH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.984
KXB30415.1
AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.980
KXB30633.1
Cytochrome C oxidase Cbb3; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.947
KXB30412.1
Plastocyanin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.930
KXB30995.1
Nitric oxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.
 
 0.925
KXB31613.1
Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.924
KXB29843.1
Amine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aromatic amine dehydrogenase light chain family.
   
  0.912
KXB32261.1
Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.906
Your Current Organism:
Dechloromonas denitrificans
NCBI taxonomy Id: 281362
Other names: ATCC BAA-841, D. denitrificans, DSM 15892, Dechloromonas denitrificans Horn et al. 2005, strain ED1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.