STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKE94316.1Lipoprotein YjbF. (211 aa)    
Predicted Functional Partners:
AKE94318.1
Outer membrane lipoprotein.
  
 0.986
AKE94317.1
Hypothetical protein.
  
 0.983
AKE95449.1
Colanic acid biosysnthesis protein WcaK.
  
     0.752
ycgR
Flagellar brake protein YcgR; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility.
  
     0.752
AKE94336.1
Conjugal transfer protein.
  
     0.726
AKE94954.1
Hypothetical protein.
  
     0.726
AKE94315.1
Hypothetical protein.
  
  
 0.702
AKE97148.1
Hypothetical protein.
  
     0.693
wcaC
Colanic acid biosynthesis glycosyltransferase WcaC.
  
    0.665
AKE95427.1
Putative seonsory protein.
  
     0.645
Your Current Organism:
Cronobacter sakazakii
NCBI taxonomy Id: 28141
Other names: ATCC 29544, C. sakazakii, CCUG 14558, CDC 4562-70 (78-067947), CIP 103183, Cronobacter sakazakii subsp. sakazakii, DSM 4485, Enterobacter sakazakii, LMG 5740, LMG:5740, NBRC 102416, NCTC 11467, yellow -pigmented Enterobacter cloacae
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