STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKE94880.1MerR family transcriptional regulator. (120 aa)    
Predicted Functional Partners:
AKE94881.1
4-carboxymuconolactone decarboxylase.
 
     0.893
AKE96080.1
MerR family transcriptional regulator.
  
 
 
 0.743
AKE94279.1
HTH-type transcriptional regulator ZntR.
  
     0.721
AKE97007.1
HTH-type transcriptional regulator CueR.
  
 
 
 0.688
AKE95745.1
MerR family transcriptional regulator.
  
     0.616
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
   
   0.604
AKE93542.1
Aerobic respiration control sensor protein ArcB.
   
 
 0.512
AKE96063.1
Hypothetical protein.
   
 
 0.512
AKE97009.1
Copper exporting ATPase.
  
  
 0.498
AKE94725.1
Hybrid sensory histidine kinase BarA.
   
 
 0.488
Your Current Organism:
Cronobacter sakazakii
NCBI taxonomy Id: 28141
Other names: ATCC 29544, C. sakazakii, CCUG 14558, CDC 4562-70 (78-067947), CIP 103183, Cronobacter sakazakii subsp. sakazakii, DSM 4485, Enterobacter sakazakii, LMG 5740, LMG:5740, NBRC 102416, NCTC 11467, yellow -pigmented Enterobacter cloacae
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