STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKE94906.1Penicillin-binding protein 1C. (777 aa)    
Predicted Functional Partners:
AKE94905.1
Alpha-2-macroglobulin domain-containing protein; Protects the bacterial cell from host peptidases.
   
 0.985
AKE94193.1
Penicillin-binding protein 1A.
  
  
0.924
AKE93081.1
Bifunctional glycosyl transferase/transpeptidase; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).
  
  
0.912
mrdA
Penicillin-binding protein II; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
  
  
 0.636
AKE93513.1
D-alanyl-D-alanine carboxypeptidase.
   
 
 0.597
AKE95482.1
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
     
 0.562
AKE96927.1
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
     
 0.546
AKE96750.1
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
     
 0.527
AKE93236.1
Inner membrane protein CreD.
  
     0.502
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
       0.463
Your Current Organism:
Cronobacter sakazakii
NCBI taxonomy Id: 28141
Other names: ATCC 29544, C. sakazakii, CCUG 14558, CDC 4562-70 (78-067947), CIP 103183, Cronobacter sakazakii subsp. sakazakii, DSM 4485, Enterobacter sakazakii, LMG 5740, LMG:5740, NBRC 102416, NCTC 11467, yellow -pigmented Enterobacter cloacae
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