STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKE94980.1Hypothetical protein. (414 aa)    
Predicted Functional Partners:
AKE94979.1
Periplasmic binding protein domain-containing protein.
    0.972
AKE94978.1
Putative sugar ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
     0.774
AKE94977.1
Ribose ABC transport ATP-binding protein RbsA.
 
     0.749
AKE96486.1
Hypothetical protein.
  
     0.651
AKE94976.1
Oxidoreductase.
 
     0.542
AKE96474.1
Putative endolysin.
  
     0.521
AKE95986.1
Putative endolysin.
  
     0.508
AKE96630.1
Type VI secretion system protein VasJ.
  
     0.496
AKE93820.1
Hypothetical protein.
  
     0.430
AKE94975.1
Major facilitator superfamily protein.
 
     0.422
Your Current Organism:
Cronobacter sakazakii
NCBI taxonomy Id: 28141
Other names: ATCC 29544, C. sakazakii, CCUG 14558, CDC 4562-70 (78-067947), CIP 103183, Cronobacter sakazakii subsp. sakazakii, DSM 4485, Enterobacter sakazakii, LMG 5740, LMG:5740, NBRC 102416, NCTC 11467, yellow -pigmented Enterobacter cloacae
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