STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ramATranscriptional activator RamA. (114 aa)    
Predicted Functional Partners:
rhaS
L-rhamnose operon regulatory protein; Activates expression of the rhaBAD and rhaT operons.
  
   0.778
AKE95591.1
AraC family transcriptional regulator.
  
   
 0.714
AKE94444.1
AraC family transcriptional regulator.
  
   
 0.708
AKE93621.1
AraC family transcriptional regulator.
  
   
 0.706
flgF
Flagellar basal body rod protein FlgF.
      
 0.688
AKE93173.1
Arabinose operon regulatory protein.
  
   0.662
AKE93759.1
Transcriptional regulator.
  
     0.662
AKE95777.1
Hypothetical protein.
  
     0.612
AKE95186.1
Hypothetical protein.
       0.574
AKE96984.1
AraC family transcriptional regulator.
  
   
 0.524
Your Current Organism:
Cronobacter sakazakii
NCBI taxonomy Id: 28141
Other names: ATCC 29544, C. sakazakii, CCUG 14558, CDC 4562-70 (78-067947), CIP 103183, Cronobacter sakazakii subsp. sakazakii, DSM 4485, Enterobacter sakazakii, LMG 5740, LMG:5740, NBRC 102416, NCTC 11467, yellow -pigmented Enterobacter cloacae
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.