STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKE95361.1DNA-binding transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (295 aa)    
Predicted Functional Partners:
AKE95360.1
Hypothetical protein; Belongs to the UPF0324 family.
 
     0.797
hdfR
Hypothetical protein; Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon.
  
     0.766
AKE95024.1
HTH-type transcriptional regulator BudR; Belongs to the LysR transcriptional regulatory family.
  
     0.739
AKE93719.1
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.720
AKE94492.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.698
AKE95556.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.639
AKE97182.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.616
AKE94713.1
DNA-binding transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.602
AKE95362.1
Lysine transporter.
  
    0.490
AKE94025.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.487
Your Current Organism:
Cronobacter sakazakii
NCBI taxonomy Id: 28141
Other names: ATCC 29544, C. sakazakii, CCUG 14558, CDC 4562-70 (78-067947), CIP 103183, Cronobacter sakazakii subsp. sakazakii, DSM 4485, Enterobacter sakazakii, LMG 5740, LMG:5740, NBRC 102416, NCTC 11467, yellow -pigmented Enterobacter cloacae
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