Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKE95397.1Hypothetical protein. (236 aa)    
Predicted Functional Partners:
AKE95396.1
Hypothetical protein.
 
 0.997
AKE95395.1
Putative outer membrane efflux protein.
   
 
 0.836
AKE96522.1
Outer membrane-specific lipoprotein transporter subunit LolC.
 
 0.803
AKE96520.1
Outer membrane-specific lipoprotein transporter subunit LolE.
  
 
 0.768
AKE95843.1
Antimicrobial peptide ABC system ATP-binding protein SapD; Belongs to the ABC transporter superfamily.
 
    
0.758
btuD
Vitamin B12 ABC transporter ATPase component BtuD; Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system.
  
     0.733
AKE95394.1
Secretion protein, HlyD family.
  
 
 0.692
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
 
   
 0.681
AKE95398.1
Hypothetical protein.
       0.678
AKE95575.1
Amino acid ABC transporter permease.
 
 
  
 0.672
Your Current Organism:
Cronobacter sakazakii
NCBI taxonomy Id: 28141
Other names: ATCC 29544, C. sakazakii, CCUG 14558, CDC 4562-70 (78-067947), CIP 103183, Cronobacter sakazakii subsp. sakazakii, DSM 4485, Enterobacter sakazakii, LMG 5740, LMG:5740, NBRC 102416, NCTC 11467, yellow -pigmented Enterobacter cloacae
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