STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKE95440.1Colanic acid biosynthesis acetyltransferase WcaF. (182 aa)    
Predicted Functional Partners:
AKE95444.1
Glycosyl transferase WcaI.
 
  
 0.954
AKE95439.1
Glycosyl transferase WcaE.
 
  
 0.926
wcaC
Colanic acid biosynthesis glycosyltransferase WcaC.
 
  
 0.916
AKE95438.1
Colanic acid biosynthesis protein.
  
    0.881
fcl
GDP-L-fucose synthetase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
 
  
 0.859
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.838
AKE95436.1
Colanic acid biosynthesis acetyltransferase WcaB; Belongs to the transferase hexapeptide repeat family.
  
  
 0.835
gmm
GDP-mannose mannosyl hydrolase; Hydrolyzes GDP-mannose; Belongs to the Nudix hydrolase family.
 
  
 0.835
AKE95447.1
UDP-glucose lipid carrier transferase.
  
  
 0.817
wcaA
Colanic acid biosynthesis glycosyltransferase WcaA.
 
  
 0.790
Your Current Organism:
Cronobacter sakazakii
NCBI taxonomy Id: 28141
Other names: ATCC 29544, C. sakazakii, CCUG 14558, CDC 4562-70 (78-067947), CIP 103183, Cronobacter sakazakii subsp. sakazakii, DSM 4485, Enterobacter sakazakii, LMG 5740, LMG:5740, NBRC 102416, NCTC 11467, yellow -pigmented Enterobacter cloacae
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