STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKE95777.1Hypothetical protein. (314 aa)    
Predicted Functional Partners:
AKE95778.1
Hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.867
rhaR
L-rhamnose operon transcriptional activator; Activates expression of the rhaSR operon in response to L- rhamnose.
  
   0.630
AKE96044.1
DNA-binding transcriptional activator MarA.
  
     0.624
ramA
Transcriptional activator RamA.
  
     0.612
AKE93621.1
AraC family transcriptional regulator.
  
     0.590
AKE94373.1
Transcriptional regulator.
  
     0.588
AKE95591.1
AraC family transcriptional regulator.
  
     0.568
rhaS
L-rhamnose operon regulatory protein; Activates expression of the rhaBAD and rhaT operons.
  
   0.566
AKE93240.1
Right origin-binding protein.
  
     0.528
AKE94033.1
TetR family transcriptional regulator.
  
     0.514
Your Current Organism:
Cronobacter sakazakii
NCBI taxonomy Id: 28141
Other names: ATCC 29544, C. sakazakii, CCUG 14558, CDC 4562-70 (78-067947), CIP 103183, Cronobacter sakazakii subsp. sakazakii, DSM 4485, Enterobacter sakazakii, LMG 5740, LMG:5740, NBRC 102416, NCTC 11467, yellow -pigmented Enterobacter cloacae
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