STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKE95847.1Phage shock protein operon transcriptional activator. (333 aa)    
Predicted Functional Partners:
AKE93535.1
RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
 
 
 0.950
AKE95848.1
Phage shock protein PspA.
 
 
 
 0.945
AKE95850.1
DNA-binding transcriptional activator PspC.
 
   
 0.769
AKE95849.1
Phage shock protein B.
 
   
 0.673
rpoC
DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
   0.587
AKE95846.1
Antimicrobial peptide ABC transporter substrate-binding protein SapA.
      0.554
AKE95845.1
Antimicrobial peptide ABC transporter permease SapB.
       0.553
AKE96659.1
Aliphatic sulfonate-binding protein.
 
 
    0.551
AKE95842.1
Antimicrobial peptide ABC system ATP-binding protein SapF.
       0.550
AKE95843.1
Antimicrobial peptide ABC system ATP-binding protein SapD; Belongs to the ABC transporter superfamily.
       0.550
Your Current Organism:
Cronobacter sakazakii
NCBI taxonomy Id: 28141
Other names: ATCC 29544, C. sakazakii, CCUG 14558, CDC 4562-70 (78-067947), CIP 103183, Cronobacter sakazakii subsp. sakazakii, DSM 4485, Enterobacter sakazakii, LMG 5740, LMG:5740, NBRC 102416, NCTC 11467, yellow -pigmented Enterobacter cloacae
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