Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKE96385.1Hypothetical protein. (160 aa)    
Predicted Functional Partners:
AKE95657.1
Hypothetical protein.
  
  
 0.965
mdtA
Multidrug efflux system subunit MdtA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   
  
 0.957
mdtB
Multidrug efflux system subunit MdtB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. MdtB subfamily.
   
    0.956
mdtC
Multidrug efflux system subunit MdtC; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. MdtC subfamily.
   
    0.933
AKE95418.1
Signal transduction histidine-protein kinase BaeS.
  
  
 0.800
AKE93598.1
Hypothetical protein.
   
    0.772
AKE94898.1
Enhanced serine sensitivity protein SseB.
  
     0.766
lpoB
Hypothetical protein; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b). Belongs to the LpoB family.
  
     0.760
AKE97083.1
Hypothetical protein.
  
     0.757
damX
Cell division protein; Non-essential cell division protein.
  
     0.715
Your Current Organism:
Cronobacter sakazakii
NCBI taxonomy Id: 28141
Other names: ATCC 29544, C. sakazakii, CCUG 14558, CDC 4562-70 (78-067947), CIP 103183, Cronobacter sakazakii subsp. sakazakii, DSM 4485, Enterobacter sakazakii, LMG 5740, LMG:5740, NBRC 102416, NCTC 11467, yellow -pigmented Enterobacter cloacae
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