Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKE96407.1Hypothetical protein. (506 aa)    
Predicted Functional Partners:
AKE96056.1
Diguanylate cyclase.
   
 0.973
AKE96057.1
Hypothetical protein.
 
  
 0.944
AKE93294.1
Diguanylate cyclase with GAF sensor.
 
  
 0.920
AKE93281.1
Diguanylate cyclase.
 
     0.860
AKE93433.1
Diguanylate cyclase.
   
 0.843
AKE94093.1
Cyclic di-GMP phosphodiesterase.
  
   
 0.801
AKE94350.1
GGDEF domain protein.
   
 0.793
AKE96055.1
Diguanylate cyclase.
  
  
 0.786
AKE95515.1
GGDEF domain-containing protein.
 
     0.774
AKE93295.1
Diguanylate cyclase.
  
   
 0.773
Your Current Organism:
Cronobacter sakazakii
NCBI taxonomy Id: 28141
Other names: ATCC 29544, C. sakazakii, CCUG 14558, CDC 4562-70 (78-067947), CIP 103183, Cronobacter sakazakii subsp. sakazakii, DSM 4485, Enterobacter sakazakii, LMG 5740, LMG:5740, NBRC 102416, NCTC 11467, yellow -pigmented Enterobacter cloacae
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