Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKE96417.1Hypothetical protein. (313 aa)    
Predicted Functional Partners:
AKE95484.1
Inner membrane protein YeeA.
  
     0.596
AKE93115.1
Putative AmpE protein.
  
     0.572
AKE96416.1
Hypothetical protein.
       0.518
AKE94534.1
Citrate/malate transporter; Uptake of citrate across the boundary membrane with the concomitant uptake of a sodium ion (symport system). Belongs to the sodium:citrate (SCF) symporter family.
  
     0.468
AKE95332.1
Inner membrane protein YejM.
  
     0.456
AKE94221.1
Membrane protein.
  
     0.454
yggL
Hypothetical protein.
  
     0.443
AKE96415.1
Hypothetical protein.
       0.436
Your Current Organism:
Cronobacter sakazakii
NCBI taxonomy Id: 28141
Other names: ATCC 29544, C. sakazakii, CCUG 14558, CDC 4562-70 (78-067947), CIP 103183, Cronobacter sakazakii subsp. sakazakii, DSM 4485, Enterobacter sakazakii, LMG 5740, LMG:5740, NBRC 102416, NCTC 11467, yellow -pigmented Enterobacter cloacae
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