STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH54_1071[I] COG3239 Fatty acid desaturase. (352 aa)    
Predicted Functional Partners:
CH54_1066
ABC transporter, phosphonate, periplasmic substrate-binding family protein; [P] COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component.
 
     0.848
hcr
2Fe-2S iron-sulfur cluster binding domain protein; [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
  
 0.543
norV
Flavodoxin family protein; [C] COG0426 Uncharacterized flavoproteins.
  
  
 0.487
gfo
Hypothetical protein; Oxidoreductase family, C-terminal alpha/beta domain protein; [R] COG0673 Predicted dehydrogenases and related proteins.
       0.472
opuCC
[M] COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein).
       0.470
fsrB
Globin family protein; Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress; Belongs to the globin family. Two-domain flavohemoproteins subfamily.
  
  
 0.464
CH54_2374
Fimbrial family protein; [NU] COG3539 P pilus assembly protein, pilin FimA.
  
     0.412
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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