STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH54_1139cyd_oper_ybgE: cyd operon protein YbgE; [S] COG3790 Predicted membrane protein. (99 aa)    
Predicted Functional Partners:
cydB
cydB: cytochrome d ubiquinol oxidase, subunit II; [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2.
  
    0.884
cydA_2
Bacterial Cytochrome Ubiquinol Oxidase family protein; [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1.
  
    0.816
cydB-2
cydB: cytochrome d ubiquinol oxidase, subunit II; [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2.
  
    0.779
CH54_2020
Hypothetical protein; Opacity-associated A N-terminal motif family protein; [M] COG3061 Cell envelope opacity-associated protein A.
  
     0.772
wzzE
Chain length determinant family protein; Modulates the polysaccharide chain length of enterobacterial common antigen (ECA); Belongs to the WzzB/Cld/Rol family.
  
     0.771
priC
Primosomal replication priB and priC family protein; [L] COG3923 Primosomal replication protein N''.
  
     0.771
atpI
[C] COG3312 F0F1-type ATP synthase, subunit I.
  
     0.769
CH54_3995
yejG-like family protein.
  
     0.769
CH54_1864
Bacterial virulence factor hemolysin family protein; [R] COG3726 Uncharacterized membrane protein affecting hemolysin expression.
  
     0.766
cpxP
LTXXQ motif family protein; [UNTP] COG3678 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein.
  
     0.765
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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