STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybgINIF3 family protein; [S] COG0327 Uncharacterized conserved protein. (289 aa)    
Predicted Functional Partners:
nlpI
Tetratricopeptide repeat family protein; May be involved in cell division.
   
    0.787
rfbB
dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase; [M] COG1088 dTDP-D-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
    0.584
CH54_1160
cAMP phosphodiesterases class-II family protein; [T] COG5212 Low-affinity cAMP phosphodiesterase.
       0.546
phr
FAD binding domain of DNA photolyase family protein; [L] COG0415 Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family.
       0.546
CH54_1162
Hypothetical protein.
       0.530
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
  
 0.528
pepT
Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
  
    0.453
pepT-2
peptidase-T: peptidase T; [E] COG2195 Di- and tripeptidases.
  
    0.453
pepD
Aa-his-dipept: Xaa-His dipeptidase family protein; [E] COG2195 Di- and tripeptidases.
  
    0.453
CH54_1163
Hypothetical protein.
       0.433
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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