Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
b4390 | ytcD_1 | CH54_1860 | CH54_131 | nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase; [H] COG3172 Predicted ATPase/kinase involved in NAD metabolism. | hxlR-like helix-turn-helix family protein; [K] COG1733 Predicted transcriptional regulators. | 0.721 |
b4390 | yybR | CH54_1860 | CH54_8 | nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase; [H] COG3172 Predicted ATPase/kinase involved in NAD metabolism. | hxlR-like helix-turn-helix family protein; [K] COG1733 Predicted transcriptional regulators. | 0.721 |
qorB_2 | ytcD_1 | CH54_130 | CH54_131 | 3-beta hydroxysteroid dehydrogenase/isomerase family protein; [MG] COG0702 Predicted nucleoside-diphosphate-sugar epimerases. | hxlR-like helix-turn-helix family protein; [K] COG1733 Predicted transcriptional regulators. | 0.849 |
ytcD_1 | b4390 | CH54_131 | CH54_1860 | hxlR-like helix-turn-helix family protein; [K] COG1733 Predicted transcriptional regulators. | nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase; [H] COG3172 Predicted ATPase/kinase involved in NAD metabolism. | 0.721 |
ytcD_1 | qorB_2 | CH54_131 | CH54_130 | hxlR-like helix-turn-helix family protein; [K] COG1733 Predicted transcriptional regulators. | 3-beta hydroxysteroid dehydrogenase/isomerase family protein; [MG] COG0702 Predicted nucleoside-diphosphate-sugar epimerases. | 0.849 |
ytcD_1 | yybR | CH54_131 | CH54_8 | hxlR-like helix-turn-helix family protein; [K] COG1733 Predicted transcriptional regulators. | hxlR-like helix-turn-helix family protein; [K] COG1733 Predicted transcriptional regulators. | 0.766 |
yybR | b4390 | CH54_8 | CH54_1860 | hxlR-like helix-turn-helix family protein; [K] COG1733 Predicted transcriptional regulators. | nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase; [H] COG3172 Predicted ATPase/kinase involved in NAD metabolism. | 0.721 |
yybR | ytcD_1 | CH54_8 | CH54_131 | hxlR-like helix-turn-helix family protein; [K] COG1733 Predicted transcriptional regulators. | hxlR-like helix-turn-helix family protein; [K] COG1733 Predicted transcriptional regulators. | 0.766 |