STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH54_1320Antitoxin Phd-YefM, type II toxin-antitoxin system family protein; [D] COG2161 Antitoxin of toxin-antitoxin stability system. (83 aa)    
Predicted Functional Partners:
CH54_1319
relE_StbE: addiction module toxin, RelE/StbE family protein; [JD] COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system.
 
 
 
 0.983
CH54_185
relE_StbE: addiction module toxin, RelE/StbE family protein; [JD] COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system.
 
 
 
 0.932
CH54_3433
Plasmid stabilization system family protein; [JD] COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system.
   
 
 0.708
nudK
Nudix-type nucleoside diphosphatase, YffH/AdpP family protein; [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes.
       0.686
napC
napC_nirT: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family protein; [C] COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit.
       0.478
maeB
Malic enzyme, NAD binding domain protein; [C] COG0281 Malic enzyme.
 
     0.477
napB
Nitrate reductase cytochrome c-type subunit family protein; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family.
       0.433
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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